It occurs to me that I need to clarify that.
On the "small block" models, as with the old Tonti frame "big blocks", you need to remove the upper frame to get the gearbox out. That means that the clutch cable is no longer connected. To activate the clutch to pop the gearbox off, you need to push in the lever on the back of the gearbox that the clutch cable is connected to.
I haven't had a look at the way the clutch works on the V11, but going by the parts lists, it looks like there is a rod through the gearbox that activates the clutch.
In your situation, I'd be inclined to try and leave the clutch system connected until the gearbox is separated, so as to be able to use the clutch lever to push it off. You'll have to have a look at the business yourself to see if that is possible.